Dr Hai Fang

Dr Hai Fang
PhD(Chinese AcadSc)

Bioinformatics Research Assistant

Merchant Venturers Building,
Woodland Road, Clifton BS8 1UB
(See a map)

Large-scale epigenomic data mining
Evolution of protein domain networks
Species/sequenced tree of life (sTOL)
The dcGO database of domain-centric ontologies
Function and phenotype prediction for genome sequences (dcGO Predictor) and domain sets (dcGO Enrichment)
Network-oriented connections among diseases, drugs and phenotypes using Random Walk with Restart
Topology-preserving selection and clustering of bio-omics data (i.g., transcriptome) using Self-Organizing Map

Radivojac, P, Clark, WT, Oron, TR, Schnoes, AM, Wittkop, T, Sokolov, A, Graim, K, Funk, C, Verspoor, K, Ben-Hur, A, Pandey, G, Yunes, JM, Talwalkar, AS, Repo, S, Souza, ML, Piovesan, D, Casadio, R, Wang, Z, Cheng, J, Fang, H, Gough, J, Koskinen, P, Törönen, P, Nokso-Koivisto, J, Holm, L, Cozzetto, D, Buchan, DWA, Bryson, K, Jones, DT, Limaye, B, Inamdar, H, Datta, A, Manjari, SK, Joshi, R, Chitale, M, Kihara, D, Lisewski, AM, Erdin, S, Venner, E, Lichtarge, O, Rentzsch, R, Yang, H, Romero, AE, Bhat, P, Paccanaro, A, Hamp, T, Kaßner, R, Seemayer, S, Vicedo, E, Schaefer, C, Achten, D, Auer, F, Boehm, A, Braun, T, Hecht, M, Heron, M, Hönigschmid, P, Hopf, TA, Kaufmann, S, Kiening, M, Krompass, D, Landerer, C, Mahlich, Y, Roos, M, Björne, J, Salakoski, T, Wong, A, Shatkay, H, Gatzmann, F, Sommer, I, Wass, MN, Sternberg, MJE, Skunca, N, Supek, F, Bošnjak, M, Panov, P, Džeroski, S, Smuc, T, Kourmpetis, YAI, Dijk, ADJv, Braak, CJFT, Zhou, Y, Gong, Q, Dong, X, Tian, W, Falda, M, Fontana, P, Lavezzo, E, Camillo, BD, Toppo, S, Lan, L, Djuric, N, Guo, Y, Vucetic, S, Bairoch, A, Linial, M, Babbitt, PC, Brenner, SE, Orengo, C, Rost, B, Mooney, SD & Friedberg, I 2013, ‘A large-scale evaluation of computational protein function prediction’. Nature Methods, vol 10., pp. 221-7
Fang, H & Gough, J 2013, ‘A disease-drug-phenotype matrix inferred by walking on a functional domain network’. Molecular BioSystems.